Usage#
zerodose#
Zerodose CLI.
zerodose [OPTIONS] COMMAND [ARGS]...
Options
- --version#
Show the version and exit.
abn#
Create abnormality maps.
zerodose abn [OPTIONS]
Options
- -d, --device <device>#
Device to use for inference.
- Options:
cpu | cuda:0 | cuda:1 | cuda:2 | cuda:3 | cuda:4 | cuda:5 | cuda:6 | cuda:7
- -v, --verbose#
Print verbose output.
- -o, --o <out_fnames>#
- -m, --mask <mask_fnames>#
Required
- -s, --sbpet <sbpet_fnames>#
Required
- -p, --pet <pet_fnames>#
Required
norm#
Normalize sbPET images to PET images.
zerodose norm [OPTIONS]
Options
- -d, --device <device>#
Device to use for inference.
- Options:
cpu | cuda:0 | cuda:1 | cuda:2 | cuda:3 | cuda:4 | cuda:5 | cuda:6 | cuda:7
- -v, --verbose#
Print verbose output.
- -o, --o <out_fnames>#
- -m, --mask <mask_fnames>#
Required
- -s, --sbpet <sbpet_fnames>#
Required
- -p, --pet <pet_fnames>#
Required
pipeline#
Run full pipeline.
zerodose pipeline [OPTIONS]
Options
- --space <outputspace>#
Which space to
- Options:
mr | pet
- -d, --device <device>#
Device to use for inference.
- Options:
cpu | cuda:0 | cuda:1 | cuda:2 | cuda:3 | cuda:4 | cuda:5 | cuda:6 | cuda:7
- -v, --verbose#
Print verbose output.
- --no-img#
Print verbose output.
- --no-pet-rigid#
Print verbose output.
- -oi, --out-img <out_img>#
- -oa, --out-abn <out_abn>#
- -os, --out-sbpet <out_sbpet>#
- -p, --pet <pet_fname>#
- -m, --mask <mask_fname>#
Required
- -i, --mri <mri_fname>#
Required
syn#
Synthesize baseline PET images.
zerodose syn [OPTIONS]
Options
- -i, --in <mri_fnames>#
Required Help test
- -m, --mask <mask_fnames>#
Required
- -o, --out <out_fnames>#
- -v, --verbose#
Print verbose output.
- -d, --device <device>#
Device to use for inference.
- Options:
cpu | cuda:0 | cuda:1 | cuda:2 | cuda:3 | cuda:4 | cuda:5 | cuda:6 | cuda:7