Zerodose#

Alt text

A tool to assist in personalized abnormality investigation in combined FDG-PET/MRI imaging. Created by the department of Clinically Applied Artificial Intelligence at Copenhagen University Hospital

PyPI Status Python Version License Read the documentation at https://zerodose.readthedocs.io/ Tests

Installation#

Note that a python3 installation is required for Zerodose to work. You can install Zerodose via pip from PyPI:

$ pip install zerodose

Usage#

Synthesize baseline PET#

$ zerodose syn -i mr.nii.gz -m brain_mask.nii.gz -o sb_pet.nii.gz

Create abnormality map#

$ zerodose abn -p pet.nii.gz -s sb_pet.nii.gz -m brain_mask.nii.gz -o abn.nii.gz

Please see the Command-line Reference for details.

Hardware requirements#

  • TODO

Issues and contributing#

Contributions are very welcome. If you encounter any problems, please file an issue along with a description.